Scientific Publications

• Report of the fourth conference on next generation sequencing for adventitious virus detection in biologics for humans and animals: Validation and implementation of NGS

Arifa S. Khan ^a 2, Laurent Mallet ^b 2, Johannes Blümel ^c, Noémie Deneyer ^d, Sigrid De C.J. Keersmaecker ^e, Blandine de Saint Vis ^f, Ivana Knezevic ^g, Carine Logvinoff ^h, Marie Murphy ⁱ, Siemon H.S. Ng ^j 1, Yoji Sato ^k, Michael Wall ^l, Ana Goios ^m, Pieter Neels ⁿ

2025 September

• Virus detection by short read high throughput sequencing in a high virus low cellular background

Pei-Ju Chin¹,¹¹, Christophe Lambert²,¹¹, Pascale Beurdelay³,⁹, Robert L. Charlebois⁴, Anne-Sophie Colinet², Marc Eloit³, Shanaz Gilchrist⁴, Maria Gilleece⁵, Matthew Hess⁵, Andreas Leimbach⁶, Tom J. B. de Man⁷, Olivier Vandeputte², Dawid Walas⁷,¹⁰, Weihong Wang⁸ & Arifa S. Khan¹

2025 March

• Evaluation of a viral transcriptome Next Generation Sequencing assay as an alternative to animal assays for viral safety testing of cell substrates

Pascale Beurdeley-Fehlbaum ¹, Matthew Pennington ², Nicolas Hégerlé ¹, Mélanie Albert ¹, Amy Bennett ³, Justine Cheval ¹, Allison Clark ³, Stéphane Cruveiller ¹, Céline Desbrousses ¹, Janalyn Frederick ⁴, Edwige Gros ¹, Kathryn Hunter ³, Tareq Jaber ³, Madison Gaiser ⁵, Ophélie Jouffroy ¹, Arnaud Lamamy ¹, Mickael Melkowski ¹, Jennifer Moro ³, Paula Niksa ³, Shenba Pillai ³, Marc Eloit ⁶, Horst Ruppach ³

2023 August

• Report of the second international conference on next generation sequencing for adventitious virus detection in biologics for humans and animals

Arifa S. Khanᵃ,∗, Johannes Blümelᵇ, Dieter Deforceᶜ, Marion F. Gruberᵃ, Carmen Jungbäckᵈ,ᵉ ᶠ,¹ avid Mackayᵍ, Jelle Matthijnssensʰ, Maureen O’Learyⁱ,²,stiaan Theunsᶜ, Joseph Victoriaʲ, Pieter Neelsᵈ

2020 September

• • Adventitious Virus Detection in Cells by High-Throughput Sequencing of Newly Synthesized RNAs: Unambiguous Differentiation of Cell Infection from Carryover of Viral Nucleic Acids

2019 May-June

• • Use of a new RNA next generation sequencing approach for the specific detection of virus infection in cells

Audrey Brussel ¹, Kerstin Brack ², Erika Muth ³, Rudolf Zirwes ³, Justine Cheval ³, Charles Hebert ³, Jean-Marie Charpin ³, Alice Marinaci ², Benoit Flan ¹, Horst Ruppach ², Pascale Beurdeley ³, Marc Eloit ⁴

2019 May

• Aetiology of acute meningoencephalitis in Cambodian children, 2010-2013

Paul F Horwood ¹, Veasna Duong ¹, Denis Laurent ², Channa Mey ¹, Heng Sothy ², Ky Santy ², Beat Richner ², Seiha Heng ³, Sopheak Hem ³, Justine Cheval ⁴, Christopher Gorman ¹, Philippe Dussart ¹, Menno D de Jong ⁵, Alexandra Kerleguer ³, Bertrand Guillard ³, Bernadette Murgue ⁶, Marc Lecuit ⁷, Xavier de Lamballerie ⁸, Jeremy J Farrar ⁹, Arnaud Tarantola ¹⁰, Marc Eloit ^4 7, Philippe Buchy ^1 11

2017 May

• Viral metagenomics and blood safety

V Sauvage ¹, M Eloit ²

2016 February

• The potential of whole genome NGS for infectious disease diagnosis

Marc Lecuit ¹, Marc Eloit ^2 3

2015 November

• Analysis by high throughput sequencing of Specific Pathogen Free eggs

2014 July

• The diagnosis of infectious diseases by whole genome next generation sequencing: a new era is opening

Marc Lecuit ¹, Marc Eloit ²

2014 March